Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0436.Seq
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35326| Best HMM Match : IPK (HMM E-Value=0)                         33   0.42 
SB_9281| Best HMM Match : Lsm_interact (HMM E-Value=6.7)               32   0.55 
SB_58837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_32899| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_15548| Best HMM Match : DUF385 (HMM E-Value=3.3)                    29   5.1  
SB_26626| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_20407| Best HMM Match : ResIII (HMM E-Value=0.36)                   28   9.0  

>SB_35326| Best HMM Match : IPK (HMM E-Value=0)
          Length = 598

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -1

Query: 325 SAEAIFSVSLIHSFLVLPNFTLRCEEYRN 239
           S++ + S+  +HS  VLPN T++C+E+ N
Sbjct: 183 SSKPVDSIKKMHSVAVLPNGTIKCKEFTN 211


>SB_9281| Best HMM Match : Lsm_interact (HMM E-Value=6.7)
          Length = 318

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 394 LKPTYARIRTGGAMPVPGPCASRAANARVQTEVPMPEIRRVSD 522
           LKP  ++ RTGG +P+P    +     RV  + P+P   + SD
Sbjct: 258 LKPKSSKSRTGGGIPMPDISRNPGITRRVLGKQPLPSEHKSSD 300


>SB_58837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 253 EEYRNSGCLWFLRYFRCSCHNSTFPFITRD 164
           EE+      WF  Y+RC C +   P+ T D
Sbjct: 509 EEWAQGNIRWFESYYRCLCEDCGKPYSTCD 538


>SB_32899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 346 CPPKSVGSAEAIFSVSLIHSFLVLPNFTLRCEEY 245
           C P+  G   ++F    ++S L+L NF L+C  Y
Sbjct: 42  CQPQDFGMLPSLFLSDQLNSSLILSNFRLKCFLY 75


>SB_15548| Best HMM Match : DUF385 (HMM E-Value=3.3)
          Length = 615

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 208 RCSCHNSTFPFITRDEREISFTNRTVLSKAEHIV 107
           +C+CH    P + RD +E ++    +L+  +H++
Sbjct: 543 KCACHGDESPIVVRDRKEAAYLT-NLLAGTDHLL 575


>SB_26626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 265 TLRCEEYRNSGCLWFLRYFRCSCHNSTFPFITRD 164
           T  C+E+      WF   +RC C +   P+ T D
Sbjct: 528 TRPCQEWAQGNIRWFESDYRCLCEDCGKPYSTCD 561


>SB_20407| Best HMM Match : ResIII (HMM E-Value=0.36)
          Length = 1175

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 208 RCSCHNSTFPFITRDEREISFTNRTVLSKAEHIV 107
           +C+CH    P + RD  E ++    +L+  +H++
Sbjct: 568 KCACHGDESPIVVRDREEAAYLT-NLLAGTDHLL 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,936,839
Number of Sequences: 59808
Number of extensions: 472082
Number of successful extensions: 1227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)