Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0436.Seq
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88315-16|AAK68237.1|  414|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U88315-16|AAK68237.1|  414|Caenorhabditis elegans Hypothetical
           protein C37H5.13a protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 560 DDPRLHLVTAAHSSDTRLI 504
           DDPRLHL  AA+ SD  +I
Sbjct: 309 DDPRLHLAAAAYISDATMI 327


>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +3

Query: 87  LFFYETATICSAFDNTVLFVKEISLSSLVIKGKVELWQEQRKYRRNQRQPLF 242
           +FF+  +T  +AF + V+F+  +S+  L +  ++ L     KYR +++ P++
Sbjct: 130 VFFFRHSTD-TAFSSPVIFIWLVSVWVLALIVEIILMTSNCKYRHDKKTPVY 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,928,444
Number of Sequences: 27780
Number of extensions: 353970
Number of successful extensions: 920
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)