Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0435.Seq
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   3.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.8  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.7  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 358 YSLLKKIILDICMSKVINLKIYLINQEI 275
           YS+L K     C  K+ N  + LIN  +
Sbjct: 306 YSILIKKADSFCKKKLENYSLQLINHRV 333



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 156 SYIIFKCTNDH*KLNHFLKQTFLT*ILW 73
           S ++F C   +    H L  T LT ++W
Sbjct: 219 SQLVFMCKKINKLYGHQLLLTILTYLIW 246


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 524 VCECTILEQNXIKILFPKKK 583
           +C CT+  Q   +   PKK+
Sbjct: 13  ICACTVFAQQQAEETAPKKE 32


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 343 SLITNIMFTLNLNFIFLLSNM 405
           SLI +++  + +NF+ LL ++
Sbjct: 212 SLILDLLVFITINFVVLLGDL 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,094
Number of Sequences: 336
Number of extensions: 2044
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)