Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0435.Seq
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    28   0.87 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   6.2  

>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 322 MSKVINLKIYLINQEITKYLFV*IYKKDLIIIS*SCTLTRAESSQNY 182
           +SK  N+KI+L+++ + + LF  +    L+  S SC  +  +  + Y
Sbjct: 187 LSKTANMKIWLLDKLLNRILFTLLNSDSLVNTSASCLQSLLDGEKVY 233


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 4   NSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF 102
           N  +S + L YR+S  F I   +P  +  +G+F
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNPSPAGSEGIF 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,005
Number of Sequences: 5004
Number of extensions: 32673
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)