Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0435.Seq
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3203| Best HMM Match : FGF (HMM E-Value=0.013)                      29   2.1  
SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_3203| Best HMM Match : FGF (HMM E-Value=0.013)
          Length = 423

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 534 HSQTYILLNCHQX*YLFSQQRCKIHVILNYH 442
           H + YI LN H   Y+   + CK+++ LN H
Sbjct: 158 HGKMYIRLNRHGKMYIRLNRHCKMYIRLNRH 188


>SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 1   VNSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF*EMI 114
           +NS + +  LN++ ST    E++  K S   G F + I
Sbjct: 191 INSEIRTTFLNFKPSTIADFELLREKLSLLNGTFHQYI 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,489
Number of Sequences: 59808
Number of extensions: 195863
Number of successful extensions: 206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)