Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0433.Seq
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    30   0.46 
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.7  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   5.7  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   7.5  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   7.5  

>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 546 SFHIIGLTSHILWLRRSSLILARSCWVGVHHDLATTLLGLC 668
           SF  IG+ S+I W  R      RS W+G+   +  T +  C
Sbjct: 226 SFATIGVVSNIYWQHRQLGKAGRSRWLGIRPTVRGTAMNPC 266


>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -1

Query: 407 REGILTGKIERRDGTVISLKKSEDIENLARLVLGGLEIVGDDAKVIHLTNL*RKC*AMAN 228
           +E +++ K E    T ISLK+ +DIE            + ++ K+  L N+ RK  A+  
Sbjct: 99  KERMVSSKPETNPKTPISLKELKDIEIYQNQFHYSAYEILEEEKI--LDNIFRKFTALPI 156

Query: 227 TTWTSTP 207
             W +TP
Sbjct: 157 KYWPATP 163


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 97  REHVLENGEDVANSFHDHPEDR 162
           ++H++EN   +A+ FH+  E +
Sbjct: 26  KDHIVENSSPIASKFHEFDEQK 47


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 142 ETSLQHLHRFQEHAPEIYSRTVQLPRSQSGENYHR 38
           +   QHLH    H+ +I + T +LP   S E + +
Sbjct: 291 DVDCQHLHSLDTHSLDISTHTFKLPPLMSKEVFQQ 325


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 179 LPVSAILS--SG*S*NEFATSSPFSRTCSRNILANSSASPESKWRKLPPMSWSHS 21
           LP S + S  S  S +    S+  S     N+L N + +P       PP++WS S
Sbjct: 55  LPSSGLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNKPPLTWSPS 109


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 169 PRSCLLDDHETSLQHLHRFQEHAPEIYSRTV 77
           P+  +L  HE S++HL R  E A +     V
Sbjct: 133 PKEKILTAHEASVRHLRRLTESAEDFLGTKV 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,529
Number of Sequences: 5004
Number of extensions: 62697
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)