Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0433.Seq
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244...    32   0.64 
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640...    29   4.5  
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895...    28   7.9  

>10_08_0655 -
           19621717-19622594,19623186-19623227,19624323-19624479,
           19625333-19625405,19625483-19625595
          Length = 420

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 183 TCPRKSARRCTCPCCIGHS 239
           TCPR +AR C+ PC  GHS
Sbjct: 47  TCPRCNARYCSLPCYKGHS 65


>01_06_0733 -
           31563246-31563462,31563721-31563947,31563983-31564018,
           31564750-31564862,31565872-31565950,31566739-31566956,
           31567041-31567146,31568518-31568730
          Length = 402

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 187 HVHYLSPRSCLLDDHETSLQHLHRFQEH 104
           HVHY++P      D E  L  LH F +H
Sbjct: 117 HVHYVAPSFWAWKDGERRLAKLHNFVDH 144


>05_03_0254 +
           11089236-11089290,11089366-11089415,11089530-11089562,
           11090601-11091674,11092245-11092728,11092857-11092882,
           11092883-11092993,11093082-11093171,11093251-11093322,
           11094043-11094153,11095086-11095143,11095605-11095804,
           11096666-11096818,11097134-11097334
          Length = 905

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 52  LHFDSGEAELFASIFRE-HVLENGEDVANSF---HDHPEDRIAETGSVHVQGSRH 204
           L F S   E FA+I  E  VL++  D+A S    +  PE   +E G + ++GSRH
Sbjct: 569 LKFLSQVFENFAAILSELDVLQSFADLATSSPIPYVRPEITASEEGDIILEGSRH 623


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,947,932
Number of Sequences: 37544
Number of extensions: 448014
Number of successful extensions: 1048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)