Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0433.Seq
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)                     30   2.6  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 133 NSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAIAQHFLHKLVKWI 273
           ++ H HPED + + GSV++        L   V+A+     HK VK I
Sbjct: 56  STHHQHPEDLVYDAGSVYLGTKTSPASLARAVMAVFV-TTHKTVKTI 101


>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
          Length = 758

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 610 ARMRLERLSHKMCDVKPMMWNEPLETGYWPKIRLPAVMKCPSARTTWSLPRKITSR 443
           AR  L+R     C  + MM +  LE   W    +P V KCP++   W L  ++  +
Sbjct: 431 ARKLLQRARMNACTARVMMKSIKLE---WVLGNIPEVKKCPTSIPLWLLLSRLEEK 483


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 128 TSSPFSRTCSRNILANSSASPESKWRKLPPMSWSHSLMSTTW 3
           +SS FSR+ S    + SS    + WR L  +SW+ S+   TW
Sbjct: 593 SSSRFSRSSSSISDSLSSLRSRASWRLLSDISWTRSVF--TW 632


>SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -3

Query: 186 MYTTCLRDPVFWMIMKRV--CNIFTVFKNMLPKYTREQFSFPGVKVEKITTD 37
           M+TT      +W +  RV  C I   F+N   + T      PG+  + + TD
Sbjct: 279 MFTTLDACSGYWQVEDRVRSCQICNAFRNQQQRETLHPHDLPGLPWQVVGTD 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,979,267
Number of Sequences: 59808
Number of extensions: 516199
Number of successful extensions: 1229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)