Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0433.Seq
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26200.1 68415.m03146 expressed protein                             31   0.71 
At3g55190.1 68416.m06130 esterase/lipase/thioesterase family pro...    29   3.8  
At3g25680.1 68416.m03196 expressed protein                             29   3.8  
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    29   5.0  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    28   8.7  
At3g42110.1 68416.m04323 hypothetical protein                          28   8.7  

>At2g26200.1 68415.m03146 expressed protein
          Length = 565

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 485 RQNNMVVATKDNLKMXQMMDDVEMMIREGILTGKIERRDGTVISLKKSEDIENLARLVLG 306
           R  N+VVAT  + K   ++ +   M  +  L GK++    +V+     E IE++ RL   
Sbjct: 397 RSANLVVATDADTKALTLLTENITMNLQSSLLGKLKT---SVLEWGNKEHIESIKRLACE 453

Query: 305 GLEIV-GDDAKVI 270
           G E++ G D   +
Sbjct: 454 GFEVIMGTDVTYV 466


>At3g55190.1 68416.m06130 esterase/lipase/thioesterase family
           protein similar to monoglyceride lipase from [Homo
           sapiens] GI:14594904, [Mus musculus] GI:2632162;
           contains Interpro entry IPR000379
          Length = 319

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 120 TVFKNMLPKYTREQFSFPGVKVE-KITTDELVTFVDEYDM 4
           T FK++ PK+ +E F+  G++ E    +  L  ++D +D+
Sbjct: 51  TTFKDIAPKFAKEGFAVHGIEYEGHGRSSGLSVYIDNFDL 90


>At3g25680.1 68416.m03196 expressed protein
          Length = 558

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 128 TSSPFSRTCSRNILANSSASPESKWRKLPPMSWSHSL 18
           TSS  S   SRN L NS+ +PES   +L  ++W   L
Sbjct: 265 TSSKLSGEDSRNDLGNSNFNPESFVSRLDLVNWKAQL 301


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +1

Query: 76  ELFASIFREHVLENGEDVANSFHDHPEDRIAETGSVHVQG------SRHVGVLVHVVLAI 237
           E  A+IF++HV   G  +     D   +++A T SV  Q         H   +V+V    
Sbjct: 298 EPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECF 357

Query: 238 AQHFL-HKLVK 267
             H L HK +K
Sbjct: 358 QNHTLFHKALK 368


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1167

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 4   HVVLINECDQLIGGNFL-HFDSGEAELFASIFREHVLENGEDVANSFHDHPEDRIA 168
           H V +N     +  NF+ H D        ++F +  +E GE++ N F +  + RIA
Sbjct: 15  HQVFLNFRGDELRNNFVSHLDKALRGKQINVFIDEAVEKGENLDNLFKEIEKSRIA 70


>At3g42110.1 68416.m04323 hypothetical protein
          Length = 448

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +2

Query: 119 VKMLQTRFMIIQKTGSRRQVVYMSKEVGT*VYLSMLYWP*LSIFFTSWSSG 271
           VK+L +     QKTG   ++++  +++ T  Y    +WP   ++  ++++G
Sbjct: 22  VKVLHSWKQYTQKTGETLELIFSDEQIFTLNYAGGQFWPTNHLYKMTFTNG 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,313,837
Number of Sequences: 28952
Number of extensions: 349868
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)