Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0431.Seq
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces po... 36 0.009
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 32 0.086
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce... 30 0.46
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 29 0.80
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 28 1.9
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 5.7
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 7.5
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 26 7.5
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 25 9.9
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 9.9
>SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 35.5 bits (78), Expect = 0.009
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -3
Query: 134 IIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAG 9
I+ G KA+ LR+ ++ G++ E + GDG ND+ M+ ++G
Sbjct: 211 IVDGQRKASILREKREELGLNKLETMAVGDGANDLVMMAESG 252
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.3 bits (70), Expect = 0.086
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 146 SIDLIIPGVHKANGLRQ-LQKLW-GIDDSEVVVFGDGGNDIEMLRQAGFS 3
+ ++I P +K L+ L K++ I V+ FGDG ND+ M AG+S
Sbjct: 211 TFEIIPPNDNKGVALKNILSKIYPSISLENVLAFGDGANDVCMFELAGYS 260
>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 29.9 bits (64), Expect = 0.46
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -3
Query: 143 IDLIIPGVHKANGLRQLQK--LWGIDDSEVVVFGDGGNDIEMLRQAGFS 3
I+LI +K L+ + L + + V+ FGDG ND+ M AG+S
Sbjct: 207 IELIPSNSNKGTALQYITSNILPEVKNENVISFGDGQNDLSMFAIAGWS 255
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.80
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 151 LPVWTDTIISPMASCNAFCT 210
LPV+ D I+SP+ S AFCT
Sbjct: 116 LPVFADHILSPILSDEAFCT 135
>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 435 IARH*KHLCLRSLPSRRFQPQRQFHSN-FREERDQLII 545
IARH HLC+R + S + F N R E DQ +I
Sbjct: 35 IARHTVHLCVRKIFSLHPLTETDFLPNELRSEEDQTLI 72
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 463 FAHYPAAVFSHKGNFIAISGKKEIN**Y*FPL 558
FA +S G FIAI GK ++ Y FPL
Sbjct: 364 FAGLTCVTWSPDGKFIAIGGKDDLVSIYSFPL 395
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 116 KANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQA 12
KAN R +Q+ + V GDGGND+ M++ A
Sbjct: 750 KANMTRLIQEK---KQASVCCIGDGGNDVGMIQVA 781
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 817 FMDYVSGXCWXVLAAWLIPRXIVAKAR 737
F+ Y S W VL A+++PR V R
Sbjct: 252 FLSYKSLFVWNVLFAFILPRLYVCNER 278
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 91 RNYGE*TT--AKWWSLAMAVTILRCCVRQ 11
RN E T KWWS+ V ++ CV Q
Sbjct: 157 RNTAESTNDRVKWWSILQTVILVSVCVFQ 185
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 669 RLDMDGTFLSDQKTYNRERFMAQYQQMK 586
RL +D LS +KTY R + QY+ ++
Sbjct: 20 RLPIDAEDLSSRKTYARPVLIRQYRSLR 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,008
Number of Sequences: 5004
Number of extensions: 73341
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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