Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0431.Seq
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0650 + 30872350-30872736,30873388-30873639,30873723-308738...    39   0.006
09_03_0188 + 13266080-13266329,13268124-13268201,13268274-132683...    36   0.030
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    31   0.85 
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758     29   4.5  
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529...    29   6.0  
01_01_1033 - 8178974-8178982,8179123-8179215,8179311-8179341,817...    28   7.9  

>01_06_0650 +
           30872350-30872736,30873388-30873639,30873723-30873818,
           30874005-30874173,30874452-30874552,30874910-30875002,
           30876018-30876089,30876509-30876628,30876709-30876759,
           30877621-30877809,30878099-30878266
          Length = 565

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = -3

Query: 143 IDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQA 12
           ++L+ P   K NG++ L     I   EV+  GDG NDIEML+ A
Sbjct: 484 LELVPPATSKGNGVKILLDHLCISPDEVMAIGDGENDIEMLQLA 527


>09_03_0188 +
           13266080-13266329,13268124-13268201,13268274-13268374,
           13268474-13268566,13268648-13268719,13268808-13268930,
           13269143-13269412,13271154-13271204,13271325-13271513,
           13271613-13271777
          Length = 463

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -3

Query: 248 KFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIP-GVHKANGLRQLQKLWGID 72
           KF    + E+I  V +       D    V    G +  ++P G  K NG++ L +     
Sbjct: 347 KFVFLETPEVISSVLRPHWARRVDGKAQVVQAQGDVLEVVPLGTSKGNGVKILLESLCAS 406

Query: 71  DSEVVVFGDGGNDIEMLRQAG 9
             EV+  GDG ND EML+ AG
Sbjct: 407 PDEVMALGDGKNDKEMLQLAG 427


>11_04_0160 +
           14247463-14247584,14247710-14247923,14250099-14250215,
           14251578-14251670,14251748-14251922,14252981-14253017,
           14253842-14253875,14254212-14254481,14255768-14255872,
           14256295-14256392,14256474-14256616,14257197-14257290,
           14257378-14257487,14258018-14258172,14258252-14258332,
           14258415-14258535,14259358-14259464,14259537-14259668,
           14261105-14261258,14264094-14264211,14264344-14264517,
           14264831-14264882,14265450-14265577,14265670-14265820,
           14265904-14266242
          Length = 1107

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 98  QLQKLWGIDDSEVVVFGDGGNDIEMLRQA 12
           QL KL    D   +  GDGGND+ M++QA
Sbjct: 736 QLVKLLKSCDYRTLAIGDGGNDVRMIQQA 764


>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
          Length = 223

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 708 RRWRIVDEPXN*LRLDMDGTF--LSDQKTYNRERFMAQYQQMKATRNSLCSRQRESILSV 535
           +R++I D     L  ++D  +  +SD    N E   A+Y+Q+ A   S  SR   SIL +
Sbjct: 157 KRFKIQDHACQQLTDEVDKEYKKMSDSINENTEMIKAKYKQIMAEAQSSTSRGIRSILGI 216


>01_04_0060 -
           15552024-15552070,15552249-15552435,15552643-15552930,
           15553027-15553221,15553330-15553431,15553588-15553842,
           15553936-15553995
          Length = 377

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -3

Query: 230 SDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLW---GIDDSEV 60
           + E+I  +   + +   D+ + +++G   +D++  G  K   L  L K     G   +  
Sbjct: 124 AQEVIKSLSGNMEKCGLDVKI-IYSGGQDLDILPQGAGKGQALAYLLKKLSSCGKPPNNT 182

Query: 59  VVFGDGGNDIEMLRQAG 9
           +V GD GND E+    G
Sbjct: 183 LVCGDSGNDAELFSIPG 199


>01_01_1033 -
           8178974-8178982,8179123-8179215,8179311-8179341,
           8179434-8179519,8179572-8179624,8180026-8180140,
           8180505-8180579,8180683-8180730
          Length = 169

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 527 FFPEIAMKLPLWL 489
           FFP+IA K+PLWL
Sbjct: 47  FFPQIASKVPLWL 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,797,824
Number of Sequences: 37544
Number of extensions: 543171
Number of successful extensions: 1273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)