Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0431.Seq
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_18166| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 130 IIRSMLPLPVWTDTIISPMASCNAFCTCGISSSERFRPNLKK 255
           ++RS+LPL +  D  +       A+ TC +SS++   P L++
Sbjct: 80  LLRSVLPLRITADFKLRTSFETIAWATCDLSSAQHKEPGLRQ 121


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 214 GISSSERFRPNLKKYPLSCQSYRRIP 291
           GI++ +RF+  LK YP  CQ    IP
Sbjct: 200 GIAALDRFKTRLKDYPHYCQHLASIP 225


>SB_18166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 160 WTDTIISPMASCNAFCTCGISSSERFRP 243
           +TDT+IS    CN  C  G+S  E  +P
Sbjct: 4   FTDTLISANIGCNRGCPLGVSMIEFLQP 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,078,034
Number of Sequences: 59808
Number of extensions: 554264
Number of successful extensions: 1177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)