Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0431.Seq
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase fa...    50   2e-06
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    31   1.2  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    29   3.8  
At1g25560.1 68414.m03173 AP2 domain-containing transcription fac...    28   6.6  
At3g58060.1 68416.m06472 cation efflux family protein / metal to...    28   8.7  
At1g35660.1 68414.m04432 expressed protein                             28   8.7  

>At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase
           family protein contains Pfam profiles PF00702: haloacid
           dehalogenase-like hydrolase, PF02130: Uncharacterized
           protein family UPF0054
          Length = 584

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 34/60 (56%)
 Frame = -3

Query: 191 EAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQA 12
           EA GD    V   +  ++++ PG  K NG++ L    G+   E++  GDG NDIEML+ A
Sbjct: 487 EATGDRANVVQAQSDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLA 546


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -3

Query: 167 SVHTGNGSIDLIIPGV-HKANGLRQLQKLWGIDDSEVVVF-GDGGN 36
           +V+  NG+   +IP +  ++  LR L   WGID S +VVF GD G+
Sbjct: 779 AVYCQNGARLNVIPVLASRSQALRYLLVRWGIDLSNMVVFVGDSGD 824


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 98  QLQKLWGIDDSEVVVFGDGGNDIEMLRQA 12
           QL ++    D   +  GDGGND+ M++QA
Sbjct: 735 QLVEILKSCDYRTLAIGDGGNDVRMIQQA 763


>At1g25560.1 68414.m03173 AP2 domain-containing transcription
           factor, putative similar to DNA-binding protein RAV2
           GI:3868859 from [Arabidopsis thaliana]
          Length = 361

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 105 PSPTAEIMGNRRQRSGGLWRWR*RY 31
           PSPT  ++ N   R+G +WR+R  Y
Sbjct: 234 PSPTKGVLINLEDRTGKVWRFRYSY 258


>At3g58060.1 68416.m06472 cation efflux family protein / metal
           tolerance protein, putative (MTPc3) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 411

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 12  CLTQHLNIVTAIAKDHHFAVV 74
           C +   +IV A AKDHHF VV
Sbjct: 244 CKSSRNHIVRAYAKDHHFDVV 264


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 525 LP*NCYEIAFVAENGGWVVSE-GKD-VFNGELSK--DAFATVVEHF 400
           LP NC E   V    GWV +E G++ + + EL+K  DAFA  +  F
Sbjct: 857 LPSNCSEFQSVLRKKGWVCNELGRNRLGSKELNKAEDAFADAIVAF 902


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,453,648
Number of Sequences: 28952
Number of extensions: 405224
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)