Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0424.Seq
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    68   2e-10
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    40   0.049
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    34   2.4  
UniRef50_Q0Q5D0 Cluster: Forkhead box-containing transcription f...    33   7.4  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 37/62 (59%), Positives = 40/62 (64%)
 Frame = +2

Query: 302 SFLTATILVYXXXXXXXXXXXXRLALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAG 481
           SFLTA  L+Y            RLALQ  LVK FKV SF+L+GL RV Y YFSSLPPR G
Sbjct: 42  SFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVLYCYFSSLPPRVG 101

Query: 482 SG 487
           SG
Sbjct: 102 SG 103


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 493

 Score = 39.9 bits (89), Expect = 0.049
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +1

Query: 430 PRKSPVSLFFVTTSPCREW 486
           PRKSPV LFFVTTSP REW
Sbjct: 24  PRKSPVLLFFVTTSPGREW 42


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 340 SWNYRGCWHQTCP 378
           SWNYR CWHQT P
Sbjct: 7   SWNYRSCWHQTGP 19


>UniRef50_Q0Q5D0 Cluster: Forkhead box-containing transcription
           factor FoxB; n=1; Clytia hemisphaerica|Rep: Forkhead
           box-containing transcription factor FoxB - Clytia
           hemisphaerica
          Length = 316

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 405 KCTHS-DYEAS*ESRIVIFRHYLPVP-GVGNLRFRQEKLNVVNTETNISQTEIKVTELTQ 578
           KC  + D+E   E R  I  HYLP+       +  QE    + TET I      + ++ +
Sbjct: 129 KCKATKDWETKMERRYSIRPHYLPINFEKSEKKLLQEHHKKIKTETIIRPKSFSIADILE 188

Query: 579 ELKPVNEKLS 608
           + K  NE+LS
Sbjct: 189 KEKHDNEELS 198


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,937,808
Number of Sequences: 1657284
Number of extensions: 10719421
Number of successful extensions: 25033
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25026
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)