Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0424.Seq
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    27   1.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.2  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 438 ESRIVIFRHYLPVPGVGNLRFRQEKLNV 521
           E++  ++RH  P+PGV NL  + + LN+
Sbjct: 76  ETQAELWRHTKPLPGVMNLLSKLKSLNI 103


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 412 LIPITRPRKSPVSLFFVTTSPCREWVICDL 501
           +IPI +  KS +SL F+T SPC  + IC L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSL 71


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 280 AAHKCNYELFNRNNFSIRYWSWNYR 354
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,811
Number of Sequences: 5004
Number of extensions: 44765
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)