Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0424.Seq
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345...    28   5.3  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   7.0  

>01_01_0469 -
           3456067-3456123,3456414-3456565,3456649-3456779,
           3456846-3458036,3458460-3458541,3458947-3458984,
           3459091-3459250,3459356-3459557,3460245-3460329,
           3460809-3460863,3461230-3461325,3461807-3461940,
           3462031-3462043,3462315-3462419,3462935-3463121
          Length = 895

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 527 YRDKYLPN*NKSNRTNTRIKTS 592
           ++D+Y P    S RTNTR +TS
Sbjct: 337 FKDRYSPEQRTSTRTNTRFETS 358


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 313 RNNFSIRYWSWNYRGC 360
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,570
Number of Sequences: 37544
Number of extensions: 287693
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)