Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0424.Seq
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.44 
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              30   1.8  
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)                      29   4.1  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   4.1  
SB_20667| Best HMM Match : Amelogenin (HMM E-Value=8.5)                29   4.1  
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)                  29   4.1  
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)                 28   5.4  
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  28   7.1  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 27   9.4  

>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 187  FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
            ++++P  F     RR+A Q C+ TA  C DS +H+
Sbjct: 1121 YEVQPDKFPQQHVRRHADQLCERTAPPCQDSMSHR 1155


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 187  FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
            ++++P  F     RR A Q C+ TA  C DS +H+
Sbjct: 1080 YEVQPDKFPQQHVRRQADQLCERTAPPCQDSMSHR 1114


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 441 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKL 301
           T  +   R    ++++ R +WRASL           AY K+VAVKKL
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKL 90


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 82  RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYAPQTCQY 255
           +N +   LAR+  + +F   ++  AHLDT RR P    D+     R     RYA     Y
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYALLPLWY 632

Query: 256 T 258
           T
Sbjct: 633 T 633


>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
           ++++P  F     RR+A Q C+ TA    DS +H+
Sbjct: 657 YEVQPDKFPQQHVRRHADQLCERTAPPYQDSMSHR 691


>SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)
          Length = 138

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
           ++++P  F     RR+A Q C+ TA    DS +H+
Sbjct: 31  YEVQPDKFPQQHVRRHADQLCERTAPPYQDSMSHR 65


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 292 CNYELFNRNNFSIRYWSWNYRGCWH 366
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_20667| Best HMM Match : Amelogenin (HMM E-Value=8.5)
          Length = 168

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
           ++++P  F     RR+A Q C+ TA    DS +H+
Sbjct: 50  YEVQPDKFPQQHVRRHADQLCERTAPPYQDSMSHR 84


>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
          Length = 1086

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 187  FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
            ++++P  F     RR+A Q C+ TA    DS +H+
Sbjct: 979  YEVQPDKFPQQHVRRHADQLCERTAPPYQDSMSHR 1013


>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
          Length = 956

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
           ++++   F     RR++ Q C+ TA  C D+ +H+
Sbjct: 2   YEVQQEKFPQQRVRRHSDQLCERTAPPCQDNMSHR 36


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 390 RNNWRASLXXXXXXXXXXXAYTKIVAVKKL 301
           R +WRASL           AY K+VAVKKL
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKL 43


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 503 SKSQITHSRHGEVVTKNNDTGLLRGLVIG 417
           S S ++H  HG   T+N  +G+   L  G
Sbjct: 676 STSNLSHGNHGSTTTRNMSSGIQSNLAFG 704


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 444  RIVIFRHYLPVPGV-GNLRFRQEKLNVVNTETNISQTEIKVT 566
            R+ + R +LPVP V  ++R  ++KL + + ET +S  EIK+T
Sbjct: 1344 RVDLRRAHLPVPRVFKSVREHKKKL-LQSRETTLSVEEIKIT 1384


>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1084

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 FDIEPAFFRTPAHRRYAPQTCQYTADACTDSAAHK 291
           ++++P  F     RR+A Q C+ TA    D+ +H+
Sbjct: 50  YEVQPDKFPQQHVRRHADQLCERTAPPYQDNMSHR 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,668
Number of Sequences: 59808
Number of extensions: 359239
Number of successful extensions: 884
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)