Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0424.Seq
         (626 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   7.9  
AJ439060-2|CAD27753.1|  135|Anopheles gambiae putative cytoskele...    23   7.9  
AJ438610-10|CAD27482.1|  135|Anopheles gambiae putative cytoskel...    23   7.9  

>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 277 CRCTHPRCTDTFAEHIV 227
           C+  HP   D F  HIV
Sbjct: 942 CKVKHPELRDRFYNHIV 958


>AJ439060-2|CAD27753.1|  135|Anopheles gambiae putative cytoskeletal
           regulator protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 564 TELTQELKPVNEKLSAIK 617
           TEL QEL  VNE+   IK
Sbjct: 64  TELHQELSSVNERSLGIK 81


>AJ438610-10|CAD27482.1|  135|Anopheles gambiae putative
           cytoskeletal regulator protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 564 TELTQELKPVNEKLSAIK 617
           TEL QEL  VNE+   IK
Sbjct: 64  TELHQELSSVNERSLGIK 81


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,350
Number of Sequences: 2352
Number of extensions: 12054
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)