Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0424.Seq
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 31 0.89
U67955-3|AAO91745.1| 655|Caenorhabditis elegans Hypothetical pr... 29 2.1
U67955-2|AAB07583.2| 791|Caenorhabditis elegans Hypothetical pr... 29 2.1
U97002-10|AAB52266.1| 322|Caenorhabditis elegans Hypothetical p... 29 3.6
AF039716-7|AAB96735.3| 617|Caenorhabditis elegans Sodium:neurot... 29 3.6
AF016421-1|AAC25793.1| 335|Caenorhabditis elegans Hypothetical ... 29 3.6
U00066-3|AAA50740.1| 177|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 27 8.3
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 27 8.3
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 27 8.3
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 27 8.3
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 27 8.3
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 30.7 bits (66), Expect = 0.89
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 319 CCG*KARSCICAPRCRCTHPRC 254
CCG C C PRC C RC
Sbjct: 79 CCGCGCGCCCCRPRCCCCCRRC 100
>U67955-3|AAO91745.1| 655|Caenorhabditis elegans Hypothetical
protein C16H3.3b protein.
Length = 655
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 465 YLPVPGVGNLRFRQEKLNVVNTETNISQTEIKVTELTQELKPVNEKLSAIKTLE 626
Y P + L ++ + ++ I++ K TELT+ PVNE + I T E
Sbjct: 103 YEESPKIEELTIKEPVIENISFNNEIAEPLFKPTELTKNTNPVNEIETPITTEE 156
>U67955-2|AAB07583.2| 791|Caenorhabditis elegans Hypothetical
protein C16H3.3a protein.
Length = 791
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 465 YLPVPGVGNLRFRQEKLNVVNTETNISQTEIKVTELTQELKPVNEKLSAIKTLE 626
Y P + L ++ + ++ I++ K TELT+ PVNE + I T E
Sbjct: 239 YEESPKIEELTIKEPVIENISFNNEIAEPLFKPTELTKNTNPVNEIETPITTEE 292
>U97002-10|AAB52266.1| 322|Caenorhabditis elegans Hypothetical
protein K09H11.7 protein.
Length = 322
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 283 PRCRCTHPRCTDTFAE 236
P+CR T P C DTFA+
Sbjct: 9 PKCRSTKPLCPDTFAK 24
>AF039716-7|AAB96735.3| 617|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 1
protein.
Length = 617
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 583 NSCVSSVTFISVWEIFVSVLTTLSFSCL 500
N+ V F+SVW + +S + T+S C+
Sbjct: 309 NNLVCDSIFLSVWHLIISFVQTMSIICI 336
>AF016421-1|AAC25793.1| 335|Caenorhabditis elegans Hypothetical
protein F44E7.2 protein.
Length = 335
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 283 PRCRCTHPRCTDTFAE 236
P+CR T P C DTFA+
Sbjct: 26 PKCRSTKPLCPDTFAK 41
>U00066-3|AAA50740.1| 177|Caenorhabditis elegans Hypothetical
protein R12B2.2 protein.
Length = 177
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 190 DIEPAFFRTPAHRRYAPQTCQYT 258
D++P F R+P R P T +YT
Sbjct: 137 DLQPLFHRSPCEERVRPITAKYT 159
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2266 QVSEKVRQLKESLKPVGEKMDAFNT 2290
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2266 QVSEKVRQLKESLKPVGEKMDAFNT 2290
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2266 QVSEKVRQLKESLKPVGEKMDAFNT 2290
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 QTEIKVTELTQELKPVNEKLSAIKT 620
Q KV +L + LKPV EK+ A T
Sbjct: 2811 QVSEKVRQLKESLKPVGEKMDAFNT 2835
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,079,940
Number of Sequences: 27780
Number of extensions: 268100
Number of successful extensions: 675
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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