Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0424.Seq
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   5.6  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   7.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   7.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   7.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   7.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   7.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 226 RRYAPQTCQYTADACTDSAAHKCNYELFNRNNFSI 330
           + Y   TC   +DA     +   N EL N + FSI
Sbjct: 444 KTYERDTCLLASDALKQILSAAYNVELHNSSPFSI 478


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 226 RRYAPQTCQYTADACTDSAAHKCNYELFNRNNFSI 330
           + Y   TC   +DA     +   N EL N + FSI
Sbjct: 482 KTYERDTCLLASDALKQILSAAYNVELHNSSPFSI 516


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -2

Query: 571 SSVTFISVWEIFVSVLTTLSFSC 503
           S VT+  +W + V++ + + + C
Sbjct: 96  SKVTYSGLWRVCVAISSRMEYEC 118


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 524 NYIKFFLSKSQITHSRHGEVVTKNNDT 444
           NYI  F + + I+H   G+    +N+T
Sbjct: 41  NYINNFETSNGISHQESGQPKQVDNET 67


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 277 SAAHKCNYELFNRNNFSIRYWSWNY 351
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 277 SAAHKCNYELFNRNNFSIRYWSWNY 351
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 277 SAAHKCNYELFNRNNFSIRYWSWNY 351
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 277 SAAHKCNYELFNRNNFSIRYWSWNY 351
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 277 SAAHKCNYELFNRNNFSIRYWSWNY 351
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 479 RHGEVVTKNNDT 444
           R+ E+V KNNDT
Sbjct: 336 RNIEIVAKNNDT 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,716
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)