Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0424.Seq
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38490.1 68415.m04728 CBL-interacting protein kinase 22, puta...    30   1.1  
At1g63110.3 68414.m07131 cell division cycle protein-related con...    28   5.8  
At1g63110.2 68414.m07132 cell division cycle protein-related con...    28   5.8  
At1g63110.1 68414.m07130 cell division cycle protein-related con...    28   5.8  

>At2g38490.1 68415.m04728 CBL-interacting protein kinase 22,
           putative (CIPK22) identical to CBL-interacting protein
           kinase 22 [Arabidopsis thaliana] gi|17902248|gb|AAL47845
          Length = 455

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +3

Query: 378 SNCSSL--KYLKCTHSDYEAS*ESRIVIFRHYLPVPGVGNLRFRQEKLNVVNTE--TNIS 545
           SN S L   ++   H D   S ES  VI R    V    NLR  ++K   +  E    ++
Sbjct: 344 SNLSGLFGNFVTPDHCDQFVSDESTAVIMRKVEEVAKQLNLRIAKKKERAIKLEGPHGVA 403

Query: 546 QTEIKVTELTQELKPVNEK 602
              +KV  LT EL  V  K
Sbjct: 404 NVVVKVRRLTNELVMVEMK 422


>At1g63110.3 68414.m07131 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 407

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 619 VLIALNFSLTGFNSCVSSVTFISVWEIFVSVLTTLSFS 506
           + +A++  L  + S   S  ++S+W +FV+ L  + FS
Sbjct: 297 IYLAISSILKSYPSVGDSALYLSLWALFVNELLDMKFS 334


>At1g63110.2 68414.m07132 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 397

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 619 VLIALNFSLTGFNSCVSSVTFISVWEIFVSVLTTLSFS 506
           + +A++  L  + S   S  ++S+W +FV+ L  + FS
Sbjct: 287 IYLAISSILKSYPSVGDSALYLSLWALFVNELLDMKFS 324


>At1g63110.1 68414.m07130 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 469

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 619 VLIALNFSLTGFNSCVSSVTFISVWEIFVSVLTTLSFS 506
           + +A++  L  + S   S  ++S+W +FV+ L  + FS
Sbjct: 359 IYLAISSILKSYPSVGDSALYLSLWALFVNELLDMKFS 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,590
Number of Sequences: 28952
Number of extensions: 234916
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)