Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0419.Seq
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.048
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.59 
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   4.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.048
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 124 RNNFSIRYWSWNYRGCWHQTC 186
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = +1

Query: 112  ELFNRNNFSIRYWSWNYRGCWHQTC 186
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/19 (36%), Positives = 7/19 (36%)
 Frame = +1

Query: 130  NFSIRYWSWNYRGCWHQTC 186
            NF      W Y  CW   C
Sbjct: 1511 NFDGLDLDWEYPKCWQVDC 1529



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 115  LFNRNNFSIRYW 150
            +F   NFSI YW
Sbjct: 1615 VFYNANFSINYW 1626



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/19 (36%), Positives = 7/19 (36%)
 Frame = +1

Query: 130  NFSIRYWSWNYRGCWHQTC 186
            NF      W Y  CW   C
Sbjct: 2434 NFDGLDLDWEYPKCWQVDC 2452


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 433 RHLKDASPVLDHAICKSYPDSSKLTIRTRGPPSI 534
           RH+K A PV+  + C     S++L  +  GP ++
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGPVTL 101


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +1

Query: 133 FSIRYWSWNYRGCWHQ 180
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,042
Number of Sequences: 336
Number of extensions: 2572
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)