Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0419.Seq
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   0.62 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.5  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   3.3  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   4.4  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   5.8  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   5.8  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.7  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 433 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 329
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 400 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 263
           +P +S V  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 457 VLDHAICKSYPDSSKLTIRTRGPPSIGFDLIKALIP 564
           ++D    K Y   +  T+  +  PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 320 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 418
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 322 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 423
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 556 VLLLDQNQSTEGLASESLILMNLDNFCRSHGQVPATH 446
           +LLLD+  S     SE L+   LDN  RS   +   H
Sbjct: 588 ILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAH 624


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 91  AAHKCNYELFNRNNFSIRYWSWNYR 165
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,700
Number of Sequences: 5004
Number of extensions: 41245
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)