Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0419.Seq
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0861 + 8153108-8153266,8154633-8155136 33 0.16
09_01_0019 + 403078-404211 31 0.84
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 30 1.5
06_01_0889 - 6807449-6809257 29 1.9
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 28 5.9
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 28 5.9
01_05_0005 - 16886553-16886946,16887079-16887404 28 5.9
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 27 7.8
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 229 PITRPRKSPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 402
P ++ R +P SS P G RL S +VA+ + P P S+P D P TT+ +
Sbjct: 86 PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145
Query: 403 AE 408
E
Sbjct: 146 IE 147
>09_01_0019 + 403078-404211
Length = 377
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 377 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 252
G S DSG GA ++A K SRR + GSD R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/90 (27%), Positives = 37/90 (41%)
Frame = +1
Query: 268 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKD 447
SS PP S +RL + S AP P + +P P + V ++ I S G +L
Sbjct: 6 SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNL-- 63
Query: 448 ASPVLDHAICKSYPDSSKLTIRTRGPPSIG 537
+ D A S+ D++ PP G
Sbjct: 64 --ALFDLAPSPSHHDAAAAAASPGAPPPSG 91
>06_01_0889 - 6807449-6809257
Length = 602
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/86 (27%), Positives = 41/86 (47%)
Frame = +1
Query: 265 FSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLK 444
F+SLPPRA + A +L SL ++ P P +PLP+ + A ++ H
Sbjct: 76 FASLPPRAAASLLALML-SLPLLP-DHFTFPRLLPAAPLPLAAQLHA-LLLKLNLHSHAH 132
Query: 445 DASPVLDHAICKSYPDSSKLTIRTRG 522
+ +L + + PD +++ RT G
Sbjct: 133 SLNALLAAYLAAARPDLARVLFRTSG 158
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 238 RPRKSPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 405
RPR SP R S PP + R P+L++VA + + + + P S P T+ +A
Sbjct: 299 RPR-SPRRSSSPAPPPSPRRILRRPRPTLELVAGAVSITTQDPPPSMRPCPTLELA 353
>02_05_0435 -
28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 538 NQSTEGLASESLILMNLDNFCRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVTGNQGSI 359
+Q T+G + I + D + R H P + L N ++R LS T N GS
Sbjct: 740 SQLTQGHHGDGTISNHFDGYARGHSGYPQSALPNPGHFSWRPHTCAGSGLSTDTSNHGSF 799
Query: 358 P 356
P
Sbjct: 800 P 800
>01_05_0005 - 16886553-16886946,16887079-16887404
Length = 239
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 124 RNNFSIRYWSWNYRGC 171
R+N S RYW W GC
Sbjct: 90 RSNSSFRYWRWQPHGC 105
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 316 PSLDVVAVSQAPSPESNPDSPLP 384
P LD ++Q PSP +NP P P
Sbjct: 55 PPLDEETLAQFPSPPTNPSPPPP 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,492
Number of Sequences: 37544
Number of extensions: 312712
Number of successful extensions: 928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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