Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0419.Seq
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   6e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.040
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.053
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   3.5  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   6.1  
SB_12548| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.0  
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)                 27   8.0  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 325 DVVAVSQAPSPESNPDSPLPVTTM 396
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 334 AVSQAPSPESNPDSPLPVTTM 396
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = -2

Query: 216 LNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 82
           ++++ R +WRASL           AY K+VAVKKLVV F    VG
Sbjct: 56  MHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 100


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 335 PFLRLPLRNRTLIPRYP 385
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = -2

Query: 201 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 82
           R +WRASL           AY K+VAVKKLVV F    VG
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 53


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 16  FRTPAHRRYAPQTCQYHRGCVPXDSAAHKCNYELFNRNNFSIRYWS-WNYRGC 171
           FRT   R Y     + HR C     + H C   +F R   ++R WS  ++ GC
Sbjct: 357 FRTLKQRSYK---IRVHRKCCACGRSVHTCAALVFARFTLALRLWSLGSHLGC 406


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = -2

Query: 189 RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 82
           RASL           AY K+VAVKKLVV F    VG
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 40


>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 373 NQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDTD 251
           ++G+I  + P+  L   RK + +++  S H +    NND D
Sbjct: 86  SEGAILIKRPQTALESGRKRSASEMIPSHHSKSFNNNNDDD 126


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 103 CNYELFNRNNFSIRYWSWNYRGCWH 177
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 316 PSLDVVAVSQAPSPESNPDSPLP 384
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_12548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +1

Query: 229 PITRPRKSPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLP 384
           P   PR SP +   + PPR+ S   +      D V VS   SP     SP P
Sbjct: 286 PPDPPRTSPPKIPPAYPPRSSSTSLSSRSSPRDSVKVSATGSPVPPAGSPAP 337


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = -2

Query: 201 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVG 82
           R    ASL           AY K+VAVKKLVV F    VG
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 63


>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
          Length = 447

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 405 RNYHRKLIRQTFERCVAGT*PCDLQKLSRFIKINDSDARPSVDW 536
           +N+H K +R+  E C     P     L RF K+ND  A  SV+W
Sbjct: 187 KNFHGKHLRKVMENC-----PHITSLLIRFTKLNDV-ALMSVNW 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274,726
Number of Sequences: 59808
Number of extensions: 341977
Number of successful extensions: 878
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)