Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0419.Seq
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    29   1.7  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   4.0  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear recep...    27   9.3  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 229 PITRPRKSPYRYFSSLPPRAGSG*FARLLPSLDVVAV 339
           P+ R   SP  YF  L  R GSG  + ++  L VVAV
Sbjct: 30  PLARGALSPAAYFRDLENRHGSGASSPIVGGLSVVAV 66


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 313 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI-ES**GRHLKDASPVLDHAICKSYP 489
           +P+  V+  ++ PS +S     + VTT  V+ TTI  S         + V   A   + P
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATP 618

Query: 490 DSSKLTIRTRGPPSIGFDLI 549
             SK T  TR P +   +L+
Sbjct: 619 KPSKRT-TTRRPMTASKELV 637


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = +1

Query: 241 PRKSPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETT 414
           P+  P   F  LPP      F R + S  + AV     P   PD  LP+TTMV    T
Sbjct: 145 PKIDPRLDFGPLPPN-----FQRKIDSNHIPAV-----PPYEPDDDLPMTTMVTLTNT 192


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 296 GNLRACCLPWMW*PFLRLPLR 358
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical
           protein K06B4.2 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 16  FRTPAHRRYAPQTCQYHRGCVPXDSAAHKCNYELFNR 126
           F T A + YA  TC+Y + C    +   KC +  F +
Sbjct: 26  FFTRATKNYAKFTCKYDKKCFESFTILPKCQFCRFKK 62


>AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-52 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 16  FRTPAHRRYAPQTCQYHRGCVPXDSAAHKCNYELFNR 126
           F T A + YA  TC+Y + C    +   KC +  F +
Sbjct: 26  FFTRATKNYAKFTCKYDKKCFESFTILPKCQFCRFKK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,256
Number of Sequences: 27780
Number of extensions: 242040
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)