Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0419.Seq
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 326  SKEGSRRANYPLPARGGSDEK*RYGLLR 243
            +K  S+ AN P PA GG   + + G  R
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRGKYR 1041


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 553 LLLDQNQSTEGLASESLILMNLDNFCRSHGQVPAT 449
           +L     S + L    L  +NL + CR HG  PAT
Sbjct: 417 VLFPSLDSRDELHPRELEAVNLGSACRIHGS-PAT 450


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  SAAHKCNYELFNRNNFSIRYWSWNY 162
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  SAAHKCNYELFNRNNFSIRYWSWNY 162
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  SAAHKCNYELFNRNNFSIRYWSWNY 162
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  SAAHKCNYELFNRNNFSIRYWSWNY 162
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  SAAHKCNYELFNRNNFSIRYWSWNY 162
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 289 RHGEVVTKNNDT 254
           R+ E+V KNNDT
Sbjct: 336 RNIEIVAKNNDT 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,893
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)