Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0419.Seq
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   2.1  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   2.8  
At3g56880.1 68416.m06327 VQ motif-containing protein contains PF...    27   6.5  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 307 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE---TTIES**GRHLKDASPVLDHAIC 477
           RLLPSL VV+   +P+ +  P S LP + + V E     + +   + L +    L+  IC
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLELRGCDLSTSSAKGLLELRHTLEKLIC 143

Query: 478 KSYPDSSKLTIRTR 519
            +  D+ +    +R
Sbjct: 144 HNSTDALRHVFASR 157


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 316 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 423
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At3g56880.1 68416.m06327 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 245

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 217 SVLIPITRPRKSPYRYFSSLPPRAGSG*FARLLPSLD 327
           S+  PI +P   P+R  S LPP  G+   +  +P+LD
Sbjct: 150 SIFAPIVKPE--PHRLASRLPPSCGNLDRSSAVPTLD 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,799
Number of Sequences: 28952
Number of extensions: 230116
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)