Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0416.Seq
         (458 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A0F82 Cluster: Nucleoside/nucleotide receptor.;...    35   0.97 
UniRef50_Q26BP9 Cluster: Riboflavin biosynthesis protein RibD; n...    32   6.8  

>UniRef50_UPI00006A0F82 Cluster: Nucleoside/nucleotide receptor.;
           n=2; Xenopus tropicalis|Rep: Nucleoside/nucleotide
           receptor. - Xenopus tropicalis
          Length = 317

 Score = 34.7 bits (76), Expect = 0.97
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 181 FFSLDCSVFVLKKKCILLQRRTGTFHPRRSLKYCIIKWLR 300
           +F+L CS+F L   CI   R  G  HP R+++   ++W+R
Sbjct: 77  YFNLYCSIFFLT--CISYHRYRGICHPMRTMRIETLRWVR 114


>UniRef50_Q26BP9 Cluster: Riboflavin biosynthesis protein RibD; n=2;
           Flavobacteria|Rep: Riboflavin biosynthesis protein RibD
           - Flavobacteria bacterium BBFL7
          Length = 337

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 175 IDFFSLDCSVFVLKKKCILLQRRTGTFHPRRSLKYCIIKW 294
           I+   ++  V +L+K+C  L +R  TFH RR   Y I+KW
Sbjct: 123 IEKAGIEVVVGILEKECNELNKRFFTFH-RRQRPYVILKW 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,608,353
Number of Sequences: 1657284
Number of extensions: 5911731
Number of successful extensions: 9364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9364
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)