Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0416.Seq
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    29   0.34 
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    24   9.7  

>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 231 IAETH-WNFPSTKIIKILHYKMASIFVIDMGCEP 329
           IAETH W  P T    +L Y   +  ++D+GC P
Sbjct: 18  IAETHAWRTPETCSTYMLKYVKKTDRILDVGCGP 51


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 356 DILNRVF*LRFTTHIYYKYRSHFIMQYFN 270
           D+  +V  +RF T +YY+Y+   I+  +N
Sbjct: 277 DMYAQVHYIRFNTLLYYRYQLQEILLSYN 305


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 204 LRFEKEMYSIAETHWNFPSTKIIKILHYKMASIFVIDMGCE 326
           LR  +E+  I  + W++   ++  ILH ++ S   +   C+
Sbjct: 68  LRSSQELVLIVSSEWDWSIKRLTFILHERLISSRGVSQTCK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,140
Number of Sequences: 5004
Number of extensions: 28630
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)