Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0416.Seq
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       28   4.3  
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)                 27   5.6  

>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 109 IVRNDSSSLLFITIHFNPSRLKNNCVQ*CLKHG 11
           ++R D  SL      F   RL +NCV  C KHG
Sbjct: 782 VIRVDWRSLKRQCHRFTSGRLVDNCVNGCSKHG 814


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 277  ILMIFVDGKFQCVSAIEYISFSKR 206
            IL++ +  KF+C   I +ISF+K+
Sbjct: 1955 ILILVIGAKFECAKKIGWISFNKK 1978


>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
          Length = 431

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 196 CSVFVLKKKCILLQRRTGTFHPRRSLKYCII 288
           C +  ++ K ++  +R G FH RR+LK C++
Sbjct: 293 CYIKEIEPKIVVFSKR-GHFHIRRNLKACLV 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,710
Number of Sequences: 59808
Number of extensions: 188131
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)