Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0416.Seq
         (458 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015206-1|AAT94435.1|  932|Drosophila melanogaster RE62451p pro...    29   4.0  
AF162795-1|AAD51936.1|  725|Drosophila melanogaster mutant nucle...    29   4.0  
AF162793-1|AAD50780.1| 1257|Drosophila melanogaster XPG variant ...    29   4.0  
AF162792-1|AAD50779.1| 1236|Drosophila melanogaster XPG protein.       29   4.0  
AF144092-1|AAD38375.1| 1236|Drosophila melanogaster nucleotide e...    29   4.0  
AF125578-1|AAD47568.1| 1236|Drosophila melanogaster DNA repair e...    29   4.0  
AE014134-1515|AAO41169.1| 1236|Drosophila melanogaster CG10890-P...    29   4.0  
AE014134-1514|AAF52678.1| 1236|Drosophila melanogaster CG10890-P...    29   4.0  
AE014134-1513|AAG22424.1| 1257|Drosophila melanogaster CG10890-P...    29   4.0  
AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA...    28   5.3  

>BT015206-1|AAT94435.1|  932|Drosophila melanogaster RE62451p
           protein.
          Length = 932

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 61  RLCKLLYYRVRPVFIFD-GCVPQLK 84


>AF162795-1|AAD51936.1|  725|Drosophila melanogaster mutant
           nucleotide excision repairprotein mus201 protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 61  RLCKLLYYRVRPVFIFD-GCVPQLK 84


>AF162793-1|AAD50780.1| 1257|Drosophila melanogaster XPG variant
           protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 82  RLCKLLYYRVRPVFIFD-GCVPQLK 105


>AF162792-1|AAD50779.1| 1236|Drosophila melanogaster XPG protein.
          Length = 1236

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 61  RLCKLLYYRVRPVFIFD-GCVPQLK 84


>AF144092-1|AAD38375.1| 1236|Drosophila melanogaster nucleotide
           excision repair proteinMUS201 protein.
          Length = 1236

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 61  RLCKLLYYRVRPVFIFD-GCVPQLK 84


>AF125578-1|AAD47568.1| 1236|Drosophila melanogaster DNA repair
           endonuclease protein.
          Length = 1236

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 61  RLCKLLYYRVRPVFIFD-GCVPQLK 84


>AE014134-1515|AAO41169.1| 1236|Drosophila melanogaster CG10890-PC,
           isoform C protein.
          Length = 1236

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 61  RLCKLLYYRVRPVFIFD-GCVPQLK 84


>AE014134-1514|AAF52678.1| 1236|Drosophila melanogaster CG10890-PB,
           isoform B protein.
          Length = 1236

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 61  RLCKLLYYRVRPVFIFD-GCVPQLK 84


>AE014134-1513|AAG22424.1| 1257|Drosophila melanogaster CG10890-PA,
           isoform A protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 KIIKILHYKMASIFVIDMGCEPQLE 338
           ++ K+L+Y++  +F+ D GC PQL+
Sbjct: 82  RLCKLLYYRVRPVFIFD-GCVPQLK 105


>AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA
            protein.
          Length = 1660

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 313  SITNIEAIL*CSILMIFVDGKFQCVSAIEYI--SFSK 209
            S+   EA+  CS L I VDG+F+C+ +++ +   FSK
Sbjct: 1483 SMDECEAL--CSRLAIMVDGEFKCLGSVQSLKNQFSK 1517


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,671
Number of Sequences: 53049
Number of extensions: 268490
Number of successful extensions: 453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)