Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0416.Seq
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    27   5.0  

>Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical
           protein W06F12.3 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 189 LGLQCLRFEKEMYSIAETHWNF-PSTKIIKILHYKMASIFVIDMGCEPQLENP 344
           +G+QCL   K+++ +   H +  PS   + I  +K   ++++D G   Q+  P
Sbjct: 138 VGIQCLEGLKQIHELGYIHRDIKPSNICVGIGEHKRV-LYIVDFGMARQIRFP 189


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
            W03A3.2 protein.
          Length = 1540

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 198  QCLRFEKEMYSIAETHWNFPST-KIIKILHYKMASIFVIDMGCEPQLENPI*NVLLI 365
            Q    E+ ++ +A   +N  S+ ++  +L Y++  I+    GC+P+L +   N L++
Sbjct: 1185 QIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYPETSGCKPKLRHLPTNKLIL 1241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,006,412
Number of Sequences: 27780
Number of extensions: 155853
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)