Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0416.Seq
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   6.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 167 TMTSYFTITNSFDST 123
           TM ++FT +N F ST
Sbjct: 339 TMLNFFTTSNGFRST 353


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 167 TMTSYFTITNSFDST 123
           TM ++FT +N F ST
Sbjct: 308 TMLNFFTTSNGFRST 322


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 167 TMTSYFTITNSFDST 123
           TM ++FT +N F ST
Sbjct: 359 TMLNFFTTSNGFRST 373


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 167 TMTSYFTITNSFDST 123
           TM ++FT +N F ST
Sbjct: 308 TMLNFFTTSNGFRST 322


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 192 GLQCLRFEKEMYS 230
           GL+CLRF  E+ S
Sbjct: 810 GLECLRFLNEVIS 822


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 271 MIFVDGKFQCVSAIEYISFSK 209
           M+  +GKFQ VS   +  F+K
Sbjct: 1   MVQFEGKFQFVSQNNFEEFAK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,801
Number of Sequences: 438
Number of extensions: 1943
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)