Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0415.Seq
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836...    31   1.6  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  

>07_01_0991 -
           8358309-8358338,8359115-8359393,8359964-8360092,
           8360317-8360598,8361400-8361525,8363490-8363870
          Length = 408

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = +2

Query: 221 CRHKINITCILSFNVYRVKKKKKTRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNL 400
           C H  ++T +L        +K + +G  +   +P       H  +++ + +G    +  +
Sbjct: 145 CGHDAHVTMLLGAAKLLQSRKDELKGTIKLVFQPAEEG---HAGAYHVLESGLLDDVSVI 201

Query: 401 IALQHIPLSPAGVIAKRPAP 460
             L  IP  P GV+A RP P
Sbjct: 202 FGLHVIPNLPVGVVASRPGP 221


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 335 ITIHWPSFYNVV-TGKTLALPNLIALQH 415
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,417
Number of Sequences: 37544
Number of extensions: 412434
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)