Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0412.Seq
(839 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P0AAU6 Cluster: Uncharacterized protein ybfB; n=3; cell... 109 1e-22
UniRef50_Q7DC26 Cluster: RhsC protein in rhs element; n=1; Esche... 90 6e-17
UniRef50_Q08932 Cluster: Ribosome assembly 1 protein; n=2; Sacch... 39 0.18
UniRef50_Q0B327 Cluster: Rieske (2Fe-2S) domain protein; n=1; Bu... 36 0.96
UniRef50_Q8U3F9 Cluster: Integral membrane glycosyltransferase; ... 36 1.7
UniRef50_Q58715 Cluster: Uncharacterized sodium-dependent transp... 35 2.9
UniRef50_UPI0000F2EBE8 Cluster: PREDICTED: similar to Ac1147; n=... 34 5.1
UniRef50_A0D5I2 Cluster: Chromosome undetermined scaffold_388, w... 34 5.1
UniRef50_A2QYX4 Cluster: Contig An12c0080, complete genome; n=1;... 34 5.1
UniRef50_UPI000023DD5E Cluster: hypothetical protein FG03877.1; ... 33 6.8
UniRef50_Q03VS6 Cluster: Exodeoxyribonuclease 7 large subunit; n... 33 6.8
UniRef50_Q48MY4 Cluster: ISPsy23, transposition helper protein; ... 33 8.9
UniRef50_A1ZNR2 Cluster: Putative uncharacterized protein; n=1; ... 33 8.9
>UniRef50_P0AAU6 Cluster: Uncharacterized protein ybfB; n=3;
cellular organisms|Rep: Uncharacterized protein ybfB -
Escherichia coli O157:H7
Length = 108
Score = 109 bits (261), Expect = 1e-22
Identities = 56/58 (96%), Positives = 56/58 (96%), Gaps = 2/58 (3%)
Frame = -2
Query: 262 ILF--MHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRI 95
ILF MHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRI
Sbjct: 19 ILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRI 76
Score = 49.6 bits (113), Expect = 1e-04
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 321 MKYIIFLFRAIWLALSLLILFFS 253
MKYIIFLFRAIWLALSLLILFFS
Sbjct: 1 MKYIIFLFRAIWLALSLLILFFS 23
>UniRef50_Q7DC26 Cluster: RhsC protein in rhs element; n=1;
Escherichia coli O157:H7|Rep: RhsC protein in rhs
element - Escherichia coli O157:H7
Length = 73
Score = 90.2 bits (214), Expect = 6e-17
Identities = 50/74 (67%), Positives = 55/74 (74%)
Frame = -3
Query: 729 VKEPVQIYGGXRSIINIFVSPDGKGXYTCGGQDQRGESKGDGSMGAQVKQVMIQKKLLAV 550
+KE VQIYGG RSIINIFVS KG + GE++ + G QVKQVMIQKKLLAV
Sbjct: 1 MKEAVQIYGGIRSIINIFVSQMVKGTILVVAKTN-GENQKEMVYGGQVKQVMIQKKLLAV 59
Query: 549 VTSLKPIIVVWRTV 508
VTSLKPIIVVWRTV
Sbjct: 60 VTSLKPIIVVWRTV 73
>UniRef50_Q08932 Cluster: Ribosome assembly 1 protein; n=2;
Saccharomyces cerevisiae|Rep: Ribosome assembly 1
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 381
Score = 38.7 bits (86), Expect = 0.18
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 20 SGLPGPLGQGEHADSFSVARVRXQDNPYANNV*YSPYKY*SNKEYYACWKTYYHHSIRH 196
S LP P G +D + ++++ Q A N YSP+ Y ++ Y W T Y + H
Sbjct: 15 SRLPKPTYSGTLSDGYDESKIKRQKTDSAFNAAYSPHMYPNSPYYEGSWNTGYTPQLHH 73
>UniRef50_Q0B327 Cluster: Rieske (2Fe-2S) domain protein; n=1;
Burkholderia ambifaria AMMD|Rep: Rieske (2Fe-2S) domain
protein - Burkholderia cepacia (strain ATCC 53795 /
AMMD)
Length = 408
Score = 36.3 bits (80), Expect = 0.96
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = -3
Query: 759 KPTAFNGPELVKEPVQIYGGXRSIINIFVSPDGKGXYTCGGQ-DQRGESKGDGSMGAQVK 583
+P A P++V++P + R +++ F+S D T G D+ E+ G G +
Sbjct: 272 QPPADEAPKIVRQPARTDAAGRYLMDTFMSQDAMAVETQGPIFDRSRENLGASDRGIVMF 331
Query: 582 QVMIQKKLLAVVTSLKPIIVVW 517
+ M+Q+++ AV +P+ V+
Sbjct: 332 RQMLQEQIDAVARGERPVANVY 353
>UniRef50_Q8U3F9 Cluster: Integral membrane glycosyltransferase;
n=2; Pyrococcus|Rep: Integral membrane
glycosyltransferase - Pyrococcus furiosus
Length = 700
Score = 35.5 bits (78), Expect = 1.7
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = -2
Query: 316 IYYFFIQSYM----AGFIAFNTILFMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVF 149
+YY+F+Q + ++ F L++ +LS+ + D+ L+ L S G+MV+ P +
Sbjct: 221 LYYYFVQYALLPAFTNYMLFLFALYILQLSIRERKPDIILLLGLTS-GVMVVTHPYQYML 279
Query: 148 FIALIFIGTVS 116
F A+ F T+S
Sbjct: 280 FQAVAFFTTIS 290
>UniRef50_Q58715 Cluster: Uncharacterized sodium-dependent
transporter MJ1319; n=6; Euryarchaeota|Rep:
Uncharacterized sodium-dependent transporter MJ1319 -
Methanococcus jannaschii
Length = 492
Score = 34.7 bits (76), Expect = 2.9
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = -2
Query: 295 SYMAGFIAFNTILFMHRLSLLDSTRDVSELISL--MSYGMMVICFP-----TGIVFFIAL 137
S++AGF F T+ +M S + + VSE I L +++ + P GIVFF+AL
Sbjct: 269 SFLAGFAVFGTLGYMSYTSGIPLDKAVSEGIGLAFVTFPKALSLLPFASRLFGIVFFLAL 328
Query: 136 IFIGTVSDI 110
+F G S +
Sbjct: 329 VFAGISSAV 337
>UniRef50_UPI0000F2EBE8 Cluster: PREDICTED: similar to Ac1147;
n=1; Monodelphis domestica|Rep: PREDICTED: similar to
Ac1147 - Monodelphis domestica
Length = 510
Score = 33.9 bits (74), Expect = 5.1
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 81 TRATLKESACS-PWPRGPGNPLKLLRAG 1
TRATL SAC+ P P G GNPL +R G
Sbjct: 9 TRATLTGSACAYPTPAGAGNPLNPIRDG 36
>UniRef50_A0D5I2 Cluster: Chromosome undetermined scaffold_388,
whole genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_388,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1497
Score = 33.9 bits (74), Expect = 5.1
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Frame = -3
Query: 729 VKEPVQIYGGXRSIINIFVSPDGKGXYTCGGQD-------QRGESKGDGSMGAQVKQVMI 571
+ E +++YG R + + SPDGK ++C + + G+ K +VK V
Sbjct: 204 INEEIKLYGHNRKVNQVCFSPDGKSLFSCSDDNSIRLWDFKTGKIKSLFKGKMEVKSVCF 263
Query: 570 QKKLLAVVTSLKPIIVVW--RTVKR 502
A+ S + +W +TVK+
Sbjct: 264 SLNGTALAASCGKFVYIWNLKTVKQ 288
>UniRef50_A2QYX4 Cluster: Contig An12c0080, complete genome; n=1;
Aspergillus niger|Rep: Contig An12c0080, complete genome
- Aspergillus niger
Length = 5054
Score = 33.9 bits (74), Expect = 5.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 241 SLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDII 107
+LL +DV+EL + +Y +M++C P G+ + +F V D +
Sbjct: 2366 TLLSGLQDVAELKGVDTYPLMLVCEPDGVSLHLTAVFDPAVLDAV 2410
>UniRef50_UPI000023DD5E Cluster: hypothetical protein FG03877.1; n=1;
Gibberella zeae PH-1|Rep: hypothetical protein FG03877.1
- Gibberella zeae PH-1
Length = 1127
Score = 33.5 bits (73), Expect = 6.8
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 307 NNIFHYITPVNTNLIKRPMLFPEHFILHVSKESLDQSWQFL-NSPKFIGVNIS 462
+NI H ++P N + + P H+ +H S E++DQS + + NSP F G +++
Sbjct: 855 HNISHSLSPTLHNAGFQELGLPHHYQIHES-ENVDQSVELIINSPDFGGASVT 906
>UniRef50_Q03VS6 Cluster: Exodeoxyribonuclease 7 large subunit; n=1;
Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: Exodeoxyribonuclease 7 large subunit -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 425
Score = 33.5 bits (73), Expect = 6.8
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = -3
Query: 717 VQIYG--GXRSIINIFVSPDGKGXYTCGGQDQRGESKGDGSMGAQVKQVMIQKKLLAVVT 544
V+IY G SII ++PDG G + + + + +G KQV + K +AVVT
Sbjct: 88 VEIYEPRGSYSIILESMTPDGVGELFLAYEQLKRKLQAEGLFDLPKKQVPLFPKKIAVVT 147
Query: 543 SLKPIIV--VWRTVKREV*RGKAALF 472
S ++ + RTV+R + LF
Sbjct: 148 SPTGAVIEDIARTVQRRFPSAQVILF 173
>UniRef50_Q48MY4 Cluster: ISPsy23, transposition helper protein;
n=1; Pseudomonas syringae pv. phaseolicola 1448A|Rep:
ISPsy23, transposition helper protein - Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
Length = 139
Score = 33.1 bits (72), Expect = 8.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 634 LATTSIVPFTIWGHKDIDDRTXSPIYLDRFFHQFRPIECSG 756
L TS +PFT W DD+T + LDR H ++ +G
Sbjct: 68 LILTSNLPFTQWAGTFADDQTLTAAMLDRLLHHAHIVQMTG 108
>UniRef50_A1ZNR2 Cluster: Putative uncharacterized protein; n=1;
Microscilla marina ATCC 23134|Rep: Putative
uncharacterized protein - Microscilla marina ATCC 23134
Length = 2898
Score = 33.1 bits (72), Expect = 8.9
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 592 GPHRPISF*FSPLVLATTSIVPFTIWGHK----DIDDRTXSPIYLD 717
G P+SF PLVL T PF +G + D DD T PIY D
Sbjct: 1740 GDDAPVSFSNIPLVLETDCGDPFDYYGGERTIIDFDDATGEPIYSD 1785
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 849,825,708
Number of Sequences: 1657284
Number of extensions: 18135554
Number of successful extensions: 40765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 39262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40759
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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