Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0412.Seq
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    26   0.43 
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   4.0  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   4.0  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   4.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.3  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   7.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   7.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.2  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 731 W*KNRSRYMGEXVLSSISLCPQMVKGTILVVAKTNGENQKEMGLW 597
           W + R +Y+   VL  +S+   ++ GT+++V  T     K  G+W
Sbjct: 720 WERKRRQYLCP-VLLRVSILRNIIVGTLMMVLGTGCVRIKITGVW 763


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 315 YIIFLFRAIWLALSLLI 265
           YII  +R +WL+LS L+
Sbjct: 222 YIIAHYRVLWLSLSDLL 238


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 315 YIIFLFRAIWLALSLLI 265
           YII  +R +WL+LS L+
Sbjct: 222 YIIAHYRVLWLSLSDLL 238


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 315 YIIFLFRAIWLALSLLI 265
           YII  +R +WL+LS L+
Sbjct: 222 YIIAHYRVLWLSLSDLL 238


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 712 DIWGXPFYHQYL 677
           D W  P+Y+QYL
Sbjct: 35  DPWYNPYYYQYL 46


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -2

Query: 211 ELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLG 86
           + +  M Y ++ I  P+G++  I+ +      +    R+ LG
Sbjct: 62  QFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 103


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 81  TRATLKESACSPWP 40
           TR TLK +  SP+P
Sbjct: 256 TRTTLKNNRASPYP 269


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 279 LSLLILFFSCIDFHY 235
           L++ IL+F C + HY
Sbjct: 327 LAIFILYFICDEAHY 341


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,946
Number of Sequences: 336
Number of extensions: 4622
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)