Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0412.Seq
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0178 + 17594062-17595576                                         29   4.6  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    29   4.6  

>06_03_0178 + 17594062-17595576
          Length = 504

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 622 SPLVLATTSIVPFTIWGHK--DIDDRTXSPIYLDRFFHQF 735
           SP  LAT S+ P ++ G +  D+DD   + + LD FF +F
Sbjct: 136 SPSFLATPSVAP-SVAGDEGADVDDDVEAALSLDDFFRRF 174


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 217  VSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLGPHARY 71
            + E ++ + +G +V+  P   +  I  +  GT++ +IG+ I   PH +Y
Sbjct: 1189 LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGI-IASLPHEQY 1236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,553,241
Number of Sequences: 37544
Number of extensions: 488826
Number of successful extensions: 1015
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)