Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0412.Seq
(839 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081) 33 0.38
SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_20248| Best HMM Match : GPS (HMM E-Value=1.5) 31 1.2
SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72) 30 2.7
SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14) 30 2.7
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054) 30 2.7
SB_36940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 29 6.2
SB_10606| Best HMM Match : I-set (HMM E-Value=0) 29 6.2
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
Length = 754
Score = 32.7 bits (71), Expect = 0.38
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 87 PRTILTPIMSDTVPINIRAIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
P TIL + P AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 316 PNTILKTFSFELAP---SAIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 371
>SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -3
Query: 90 WXRTRATLKESACSPWPRGPGNPLKLLRAG 1
W RTRATL P P G GN +K RAG
Sbjct: 3 WGRTRATLTGQRVFPSPEGGGNLVKHRRAG 32
>SB_20248| Best HMM Match : GPS (HMM E-Value=1.5)
Length = 555
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P+ KH + D+RLI SLTS+V E L + R++
Sbjct: 475 AIARPLPMSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 515
>SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -3
Query: 84 RTRATLKESACSPWPRGPGNPLKLLRAG 1
RTRATL S P P G GN +K RAG
Sbjct: 8 RTRATLTVSRVFPSPEGVGNLVKHRRAG 35
>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 404 AIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 444
>SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72)
Length = 485
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 223 AIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 263
>SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)
Length = 595
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 226 AIARPLPKSKHAKTVANDVRLI-SLTSQVAKIMEGLTLSRML 266
>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
Length = 596
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 240 AIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 280
>SB_36940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -2
Query: 94 VLGPHARYTEGIS 56
VLGPHARYT+G++
Sbjct: 5 VLGPHARYTDGVN 17
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 167 SNRHSILYCSNIYRDCIRHYWRKDCP 90
S+ H+ +Y +++DC RH W CP
Sbjct: 684 SSDHTHVYQRFLFKDCFRHPWPFYCP 709
>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
Length = 872
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 744 NGPELVKEPVQIYGGXRSIINIFVSPDGKGXYTCGGQDQRGESK 613
+G LV P + SI+ SP +G YTC ++ GE +
Sbjct: 599 DGQVLVSGPRHVINKDGSIVIQKASPVDRGRYTCTARNSHGEDR 642
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 744 NGPELVKEPVQIYGGXRSIINIFVSPDGKGXYTCGGQDQRGESK 613
+G LV P + SI+ SP +G YTC ++ GE +
Sbjct: 820 DGQVLVSGPRHVINKNGSIVIQKASPVDRGRYTCTARNSHGEDR 863
>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 339 YKSNKTSNVISGALHLTCF*RIIRPVL 419
Y+ T + ISG LH +C+ RII VL
Sbjct: 523 YQGGYTRDAISGWLHASCYIRIIMRVL 549
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,817,749
Number of Sequences: 59808
Number of extensions: 561284
Number of successful extensions: 1193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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