Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0412.Seq
         (839 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK000034-1|BAA90896.1|  375|Homo sapiens protein ( Homo sapiens ...    33   1.3  
BC064920-1|AAH64920.1|  375|Homo sapiens DnaJ (Hsp40) homolog, s...    32   2.3  
BC011812-1|AAH11812.2|  248|Homo sapiens DNAJB12 protein protein.      32   2.3  
AK025942-1|BAB15289.1|  170|Homo sapiens protein ( Homo sapiens ...    32   2.3  

>AK000034-1|BAA90896.1|  375|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20027 fis, clone ADSE01901. ).
          Length = 375

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = -3

Query: 708 YGGXRSIINIFVSPDGKGXYTCGGQDQRGESKGDGSMGAQVKQVMIQKKLLAVVTSLKPI 529
           +GG     N+ V  +G+  YT   +  R +++GDG +G  V+ + I   +L +V++L  +
Sbjct: 208 FGGGSPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPI--LILILVSALSQL 265

Query: 528 IV 523
           +V
Sbjct: 266 MV 267


>BC064920-1|AAH64920.1|  375|Homo sapiens DnaJ (Hsp40) homolog,
           subfamily B, member 12 protein.
          Length = 375

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = -3

Query: 708 YGGXRSIINIFVSPDGKGXYTCGGQDQRGESKGDGSMGAQVKQVMIQKKLLAVVTSLKPI 529
           +GG     N+ V  +G+  YT   +  R +++GDG +G  V+ + I   +L +V++L  +
Sbjct: 208 FGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPI--LILILVSALSQL 265

Query: 528 IV 523
           +V
Sbjct: 266 MV 267


>BC011812-1|AAH11812.2|  248|Homo sapiens DNAJB12 protein protein.
          Length = 248

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = -3

Query: 708 YGGXRSIINIFVSPDGKGXYTCGGQDQRGESKGDGSMGAQVKQVMIQKKLLAVVTSLKPI 529
           +GG     N+ V  +G+  YT   +  R +++GDG +G  V+ + I   +L +V++L  +
Sbjct: 81  FGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPI--LILILVSALSQL 138

Query: 528 IV 523
           +V
Sbjct: 139 MV 140


>AK025942-1|BAB15289.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22289 fis, clone HRC04173. ).
          Length = 170

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = -3

Query: 708 YGGXRSIINIFVSPDGKGXYTCGGQDQRGESKGDGSMGAQVKQVMIQKKLLAVVTSLKPI 529
           +GG     N+ V  +G+  YT   +  R +++GDG +G  V+ + I   +L +V++L  +
Sbjct: 3   FGGGFPSSNVHVYSNGRMRYTYQQRQDRRDNQGDGGLGVFVQLMPI--LILILVSALSQL 60

Query: 528 IV 523
           +V
Sbjct: 61  MV 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,740,089
Number of Sequences: 237096
Number of extensions: 2942742
Number of successful extensions: 5776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5776
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)