Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0412.Seq
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.4  
AF062007-1|AAC17500.1|  197|Caenorhabditis elegans unknown protein.    29   5.4  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    28   7.2  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    28   7.2  
AC006627-2|AAT68899.1|  169|Caenorhabditis elegans Abnormal cell...    28   7.2  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    28   7.2  

>U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical
           protein C05D10.3 protein.
          Length = 598

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = -2

Query: 307 FFIQSYMAGFIAFNTILFMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFI 128
           FF Q Y A F      LF    S L   RD + L+S+    +++  F TGIVFF   +  
Sbjct: 306 FFNQDYNASFWTQFLALFWR--SWLTVIRDPN-LLSVRLLQILITAFITGIVFFQTPVTP 362

Query: 127 GTVSDIIGV 101
            T+  I G+
Sbjct: 363 ATIISINGI 371


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 5   ARRSFSGLPGPLGQGEHADSFSVARVRXQDNPYANNV*YSPYKY*SNKEY 154
           +RRS   L G  G G   D FS +R + +     NNV  S Y   SN +Y
Sbjct: 126 SRRSPFHLSGANGSGRWTDLFSSSRFKRKQRQELNNVPSSSY---SNNDY 172


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 5   ARRSFSGLPGPLGQGEHADSFSVARVRXQDNPYANNV*YSPYKY*SNKEY 154
           +RRS   L G  G G   D FS +R + +     NNV  S Y   SN +Y
Sbjct: 126 SRRSPFHLSGANGSGRWTDLFSSSRFKRKQRQELNNVPSSSY---SNNDY 172


>AF062007-1|AAC17500.1|  197|Caenorhabditis elegans unknown protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 5   ARRSFSGLPGPLGQGEHADSFSVARVRXQDNPYANNV*YSPYKY*SNKEY 154
           +RRS   L G  G G   D FS +R + +     NNV  S Y   SN +Y
Sbjct: 111 SRRSPFHLSGANGSGRWTDLFSSSRFKRKQRQELNNVPSSSY---SNNDY 157


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
 Frame = -1

Query: 179 GNMFSNRHSIL---------YCSNIY-RDCIRHYWRKDCPG 87
           GN FS RH ++         +C N+  +DCI+H W   C G
Sbjct: 300 GNGFSIRHEVVRVKCDCEFVWCCNLVCKDCIQHRWISTCNG 340


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
 Frame = -1

Query: 179 GNMFSNRHSIL---------YCSNIY-RDCIRHYWRKDCPG 87
           GN FS RH ++         +C N+  +DCI+H W   C G
Sbjct: 300 GNGFSIRHEVVRVKCDCEFVWCCNLVCKDCIQHRWISTCNG 340


>AC006627-2|AAT68899.1|  169|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform b protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
 Frame = -1

Query: 179 GNMFSNRHSIL---------YCSNIY-RDCIRHYWRKDCPG 87
           GN FS RH ++         +C N+  +DCI+H W   C G
Sbjct: 121 GNGFSIRHEVVRVKCDCEFVWCCNLVCKDCIQHRWISTCNG 161


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
 Frame = -1

Query: 179 GNMFSNRHSIL---------YCSNIY-RDCIRHYWRKDCPG 87
           GN FS RH ++         +C N+  +DCI+H W   C G
Sbjct: 300 GNGFSIRHEVVRVKCDCEFVWCCNLVCKDCIQHRWISTCNG 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,193,964
Number of Sequences: 27780
Number of extensions: 428233
Number of successful extensions: 1100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)