Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0412.Seq
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.1  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 461 DIFTPINLGLFKNCQDWSNDSLET 390
           DI+TP  L +  N  + S+DS+ T
Sbjct: 354 DIYTPEGLNMLGNVIEGSSDSINT 377


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 461 DIFTPINLGLFKNCQDWSNDSLET 390
           DI+TP  L +  N  + ++DS+ T
Sbjct: 354 DIYTPEGLNMLGNVIEGNSDSINT 377


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 592 GPHRPISF*FSPLVLATTSIVPFTIW 669
           G  RPI F  +  ++A  S +PF I+
Sbjct: 154 GLKRPIRFILAAWLIALISAIPFAIY 179


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 63 ESACSPWPRGPGNPLKLLRA 4
          + + SP PR P NP++ L+A
Sbjct: 13 DRSTSPLPRKPVNPVQELKA 32


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -2

Query: 211 ELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLG 86
           + +  M Y ++ I  P+G++  I+ +      +    R+ LG
Sbjct: 215 QFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 256


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -2

Query: 211 ELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLG 86
           + +  M Y ++ I  P+G++  I+ +      +    R+ LG
Sbjct: 215 QFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 256


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -2

Query: 211 ELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLG 86
           + +  M Y ++ I  P+G++  I+ +      +    R+ LG
Sbjct: 154 QFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,333
Number of Sequences: 438
Number of extensions: 5543
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)