Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0412.Seq
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    30   2.2  
At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727 ...    29   2.9  
At1g27720.1 68414.m03388 transcription initiation factor IID (TF...    29   3.8  
At5g08570.1 68418.m01020 pyruvate kinase, putative similar to py...    29   5.1  
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ...    29   5.1  
At4g39410.1 68417.m05578 WRKY family transcription factor identi...    28   6.7  
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    28   8.9  
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    28   8.9  

>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 138  RAIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKR 260
            +AI+   PV K   ++  D   INSLTS VE+   SL  +R
Sbjct: 967  KAIEEAPPVIKETPVLVEDTEKINSLTSEVEALKASLQAER 1007


>At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727
           myosin heavy chain PCR43 [Arabidopsis thaliana]
          Length = 556

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 138 RAIKNTMPVGKHITIIP*DMRLINSLTSRVES 233
           +AI+   PV K I ++  D   INSLTS VE+
Sbjct: 172 KAIEEAPPVIKEIPVLVEDTEKINSLTSEVEA 203


>At1g27720.1 68414.m03388 transcription initiation factor IID
           (TFIID) component TAF4 family protein contains Pfam
           profile PF05236: Transcription initiation factor TFIID
           component TAF4 family
          Length = 682

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 286 PYSSE*KNNIFH-YITPVNTNLIKRPMLFPEHFILHVSKESLDQSWQFLNSPKFI 447
           P S   KN+ F  Y  P   ++ K   + P   ++HV  + +DQS++  + P+++
Sbjct: 269 PISDFPKNSSFPLYSAPWQGSVTKDHTVGPSSSVIHVEHKLIDQSFEQAHKPRYL 323


>At5g08570.1 68418.m01020 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 510

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 145 IALIFIGTVSDIIGVRIVLGPHAR 74
           IAL F+   SD++ VR VLG HA+
Sbjct: 210 IALSFVRKGSDLVNVRKVLGSHAK 233


>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
            similar to UV-damaged DNA binding protein (GI:12082087)
            [Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
            region
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 217  VSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLGPHARYT 68
            + E ++   +G +V+  P   +  I  +  GTV+ +IGV I   P  +YT
Sbjct: 959  LGEFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGV-IASLPQEQYT 1007


>At4g39410.1 68417.m05578 WRKY family transcription factor identical
           to WRKY transcription factor 13 GI:15991729 from
           [Arabidopsis thaliana]
          Length = 304

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +1

Query: 325 ITPVNTNLIKRPMLFPEHFILHVSKESLDQSWQFLNSPKFIGVN 456
           I P+NTN +     FP H  L  S  S   S   L SP F+G N
Sbjct: 18  INPINTNHLGFFFSFPSHSTLSSSSSSSSSSPSSLVSP-FLGHN 60


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 78  ACGPRTILTPIMSDTVPINIRAIKNTMPVG 167
           A GP+ +   +  D  P+ IR I NT P G
Sbjct: 196 ALGPQFVAEALAPDNPPLKIRFIDNTDPAG 225


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
            similar to UV-damaged DNA binding protein (GI:12082087)
            [Oryza sativa] and damage-specific DNA binding protein 1,
            Homo sapiens, PIR2:I38908; contains Pfam PF03178 : CPSF A
            subunit region
          Length = 1088

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 217  VSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLGPHARY 71
            + E ++   +G +V+  P   +  I  +  GTVS +IGV I   P  +Y
Sbjct: 959  IGEFVNRFRHGSLVMKLPDSDIGQIPTVIFGTVSGMIGV-IASLPQEQY 1006


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,180,610
Number of Sequences: 28952
Number of extensions: 397156
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)