Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0411.Seq
         (448 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09F96 Cluster: Ymf77; n=1; Tetrahymena malaccensis|Rep...    34   1.6  
UniRef50_UPI00004D0AC1 Cluster: Switch-associated protein 70 (SW...    31   8.6  
UniRef50_Q4YTT6 Cluster: Putative uncharacterized protein; n=1; ...    31   8.6  

>UniRef50_Q09F96 Cluster: Ymf77; n=1; Tetrahymena malaccensis|Rep:
           Ymf77 - Tetrahymena malaccensis
          Length = 1294

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 218 N*LIIYLKNTYIYVYNFFTIYFYILH 141
           N  IIYLKN++I + NFF  YF I++
Sbjct: 139 NVFIIYLKNSFIIIMNFFFRYFIIIY 164


>UniRef50_UPI00004D0AC1 Cluster: Switch-associated protein 70
           (SWAP-70).; n=1; Xenopus tropicalis|Rep:
           Switch-associated protein 70 (SWAP-70). - Xenopus
           tropicalis
          Length = 487

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 103 ICVND--LYKIWGHLFFNNKQKYNCLLVPNXARAR 5
           +C+ND   +K+W    + +++KY  L+VP   R+R
Sbjct: 107 LCINDDSAFKVWAIFNYLSEEKYPLLIVPEEVRSR 141


>UniRef50_Q4YTT6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 92

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 218 N*LIIYLKNTYIYVYNFFTIYFYILHYVK 132
           N L +Y KN YI++Y  F I  Y+L   K
Sbjct: 19  NQLYVYFKNIYIFIYYLFFIILYLLKVPK 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,347,159
Number of Sequences: 1657284
Number of extensions: 5337818
Number of successful extensions: 12942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12717
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)