Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0411.Seq
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   4.0  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   7.0  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   9.3  

>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 317 YYKYRINFCLE*NRFVPLSLRY 252
           ++K +++FCL  +RF+P   RY
Sbjct: 170 FWKDKVSFCLWSHRFIPACDRY 191


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 194 NTYIYVYNFFTIYFYILHYVKHISKTLKLLDLR 96
           N  +    FFTIY + L  + HIS  L   DLR
Sbjct: 470 NVTLSFAGFFTIYLWTLGRLLHISSKLS-TDLR 501


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 274 NRFHSKQKLMRYL 312
           NR+HS+ +LMRY+
Sbjct: 541 NRYHSETELMRYI 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,464
Number of Sequences: 5004
Number of extensions: 25757
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)