Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0411.Seq
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56368| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_56368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 212 LIIYLKNTYIYVYNFFTIYFYILHYVKHISKTLKLLDLRK 93
           +I  +  T  Y   FF +  YI +Y+K+I KTLK +  RK
Sbjct: 278 IIRMIMTTACYSKGFFNVLIYI-YYMKNIGKTLKAIACRK 316


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 191 TYIYVYNFFTIYFYILHYV 135
           TY+YVY +  +Y Y+  YV
Sbjct: 53  TYVYVYVYVYVYVYVYVYV 71


>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 67  NDPRFYIDHLRRSKSFKVLDICLT*CNI*K*IVKK 171
           NDPRF   H+R +   + LD  L+   +   IVKK
Sbjct: 525 NDPRFSPQHMRETAIIQPLDAALSIQEVIPEIVKK 559


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 69  IYFLTTNKNITVCSCRXAHEL 7
           I+F T     TVC+CR  H +
Sbjct: 215 IFFFTVRLRCTVCACRYVHSV 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,732,233
Number of Sequences: 59808
Number of extensions: 154222
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)