Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0411.Seq
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    31   0.38 
AF039047-9|AAB94228.1|  303|Caenorhabditis elegans Hypothetical ...    29   1.5  

>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 209 IIYLKNTYIYVYNFFTIY-FYILHYVKHI 126
           IIY+K+T  Y+Y+ +  Y  Y +H + HI
Sbjct: 15  IIYIKSTIYYIYHIYIPYTIYTIHQIYHI 43


>AF039047-9|AAB94228.1|  303|Caenorhabditis elegans Hypothetical
           protein K11D12.8 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 176 YNFFTIYFYILHYVKHISKTLKLLDLRK*SI 84
           Y+FF ++FY+L ++  + K  KLL  R  SI
Sbjct: 232 YSFFVVFFYLLFFIFPVLKKPKLLQDRIISI 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,769,250
Number of Sequences: 27780
Number of extensions: 136069
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)