Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0411.Seq
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.38 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 7   ELVRXSARANSYIFVCC*KINDPRFYIDHLRRSKSFKVLDICL 135
           +LV  SAR N   + CC +      Y   LRR   F V ++ L
Sbjct: 180 DLVNFSARRNVEYYSCCPEPYPDITYEIRLRRRPMFYVFNLIL 222


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 187 TYMYIIFLRSIFIYYITLNIYL 122
           TYM ++F+  + +   T+N Y+
Sbjct: 139 TYMQLVFMGIVELIMFTVNKYV 160


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 90  IYIKSGVIYFLTTNKN 43
           +YI SG +Y+ +T  N
Sbjct: 309 LYILSGCLYYFSTTIN 324


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 198 KKYIHICI*FFYDLFLYITLR 136
           KKY   C   + D+F  ITLR
Sbjct: 212 KKYYPCCDEPYPDIFFNITLR 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,815
Number of Sequences: 438
Number of extensions: 2027
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)