Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0410.Seq
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   0.70 
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    27   3.7  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   6.5  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   6.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   6.5  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    26   8.6  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   8.6  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 443 PIRPIVSRITIHWPSFYNVVTGKPWALPNLIALQ-----HIPLSPAGVIAKRPAPIRLPN 607
           P  P+ S ++ H   +    +   ++L N I+L      ++PLSP    A+ P+PIRL +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 608 SCA 616
           S A
Sbjct: 232 SDA 234


>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -1

Query: 260 KSSQIIFLDCCHTL*QFTERKIPEAASSTTMVADGGST-NMSDECLRSQNVSRAAIRVDT 84
           K  Q I+L+   ++    + K+ E      ++AD     + SDE L+  +    A+ V  
Sbjct: 24  KKCQRIYLEAYTSILLVQKEKLEELYGKEVILADREMVESSSDEILKDADNCDVAMLVVG 83

Query: 83  APVAAATHA 57
            P+ A THA
Sbjct: 84  DPMGATTHA 92


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 502 DWETLGVTQLNRLAAHPPFAS 564
           DW +LG+     LA +PPF S
Sbjct: 379 DWWSLGILIFEMLAGYPPFYS 399


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 786 WDQEXPYLKKRGPPTSKGAKNRFFQ 860
           W Q   Y+KKR PP S   ++ + Q
Sbjct: 165 WRQHYKYMKKRLPPVSDSDESNYCQ 189


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 565 WRNSEEARTDSPSQQLRSLEWANGQIV 645
           ++N  EAR   P +    L W NG I+
Sbjct: 53  FKNEREARKQLPFEVFSDLIWTNGSII 79


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -1

Query: 197 IPEAASSTTMVADGGSTNMSDECLRSQNVSRAAIRVDTAPVAAATHALPPLADTNTRAHI 18
           +P    S T + DG +  +S++  RSQ  +        +  AAA H L      N   H+
Sbjct: 213 LPIPTGSLTKI-DGLNNQLSNDLTRSQTTNIFGFAEKASSFAAAVHKLNEARIRNQACHV 271


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 550 PPFASWRNSEEARTDSPSQQLRSL-EWAN 633
           PP AS RN  E  + +PS+Q  S+ E AN
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVNETAN 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,047
Number of Sequences: 5004
Number of extensions: 61584
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)