Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0410.Seq
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1336 - 29424470-29424897,29425243-29429653                       33   0.42 
12_01_1068 - 11052769-11052943,11053103-11053182,11053304-110534...    32   0.55 
04_01_0502 - 6587068-6587964                                           31   1.7  
12_01_0363 + 2750982-2751479                                           30   2.9  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    29   5.2  
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    29   6.8  
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239...    28   9.0  

>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -1

Query: 686  NKNLTRILTKYLTLTICPF---AHSRLRNCWEGESVRASSLLRQLAKGGCAARRLSWVTP 516
            + NLT +  KYL LT CPF    H ++ +C +   +  SS    + +GG A R    V  
Sbjct: 1056 SSNLTEM--KYLILTKCPFLPLEHLQMLSCLKKLEINGSSSSLLMVEGGSAVRYQFPVKK 1113

Query: 515  RVSQSRRCKTTASEL 471
             V   R+C  +  EL
Sbjct: 1114 LV--IRKCGASGKEL 1126


>12_01_1068 -
           11052769-11052943,11053103-11053182,11053304-11053401,
           11053487-11053627,11053701-11053841,11053933-11054017,
           11055296-11055826,11055926-11055940
          Length = 421

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 191 EAASSTTMVADGGSTNMSDECLRSQNVSRAAIRVDTAPVAAATHALPPLADTNTRA 24
           E +SS++    G S   +++ + S + SR A  V +AP A    + PPL    TR+
Sbjct: 94  EYSSSSSYRRRGASAPPAEDVVVSSSYSRPAAAVASAPQACTVSSAPPLRAVETRS 149


>04_01_0502 - 6587068-6587964
          Length = 298

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 143 MSDECLRSQNVSRAAIRVDTAPVAAATH 60
           MSDECLR   +S    R++TAP     H
Sbjct: 124 MSDECLREAELSSEVTRINTAPRVLPCH 151


>12_01_0363 + 2750982-2751479
          Length = 165

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 551 PLSPAGVIAKRPAPIRLPNSCAALNGRMGK 640
           PL+P    A R AP+R+P+  AA  GR G+
Sbjct: 74  PLTPTAGAA-RSAPVRIPSEAAAAAGRRGR 102


>02_02_0453 + 10420585-10421661,10422015-10422146,10422232-10422456,
            10422555-10422680,10422777-10422839,10423214-10423296,
            10424078-10424309,10424421-10424489,10424532-10424731,
            10424819-10424894,10425015-10425081,10425194-10425471,
            10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 502  DWETLGVTQLNRLAAHPPFASWRNSE 579
            DW  LGV     L +  PF SWR SE
Sbjct: 938  DWWALGVLIYFMLQSDMPFGSWRESE 963


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -1

Query: 647 LTICPFAHSRLRNCWEGESVRASSLLRQLAKGGCAARRLSWVTPRVSQSRRCKTTASEL 471
           +T      ++LR+CW GE +     LR        A      + ++ ++RRC+  +S++
Sbjct: 494 VTTASGTETQLRDCWNGELLHGGKFLRGRRVETDMAPATPGGSSQLVENRRCQLPSSQI 552


>02_01_0335 +
           2386902-2386906,2386976-2387282,2387664-2387777,
           2390252-2390320,2390416-2390715,2390829-2390930,
           2391085-2391279,2391377-2391664,2391942-2392128,
           2393168-2393272,2393778-2393824,2393982-2394074
          Length = 603

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 556 FASWRNSEEARTDSPSQQLRSLEWANGQIV 645
           +  WR +E  ++DS +Q  +++  ANG I+
Sbjct: 438 YEKWRRAEVPKSDSVTQYFKNITHANGVII 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,694,865
Number of Sequences: 37544
Number of extensions: 433669
Number of successful extensions: 1114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)